SMTL ID : 8d5i.1

Crystal structure of dihydropteroate synthase H182G mutant (folP-SMZ_B27) from soil uncultured bacterium in complex with pteroic acid and pyrophosphate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

homo-dimer

Ligands

2 x PT1: PTEROIC ACID(Non-covalent)

PT1.1: 18 residues within 4Å: Chain A: T.51, G.52, P.53, D.86, N.105, V.107, V.128, M.130, F.141, D.177, G.181, G.182, F.183, F.209, S.211, K.215, S.216, R.249 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.141, A:F.183, A:K.215 Hydrogen bonds: A:T.51, A:T.51, A:N.105, A:G.182, A:K.215, A:S.216 Water bridges: A:S.211, A:S.211, A:S.216 Salt bridges: A:D.177 pi-Cation interactions: A:K.215, A:R.249 PT1.3: 19 residues within 4Å: Chain B: T.51, G.52, P.53, D.86, N.105, V.107, V.128, M.130, F.141, D.177, G.181, G.182, F.183, F.209, S.211, K.215, S.216, R.249 Ligands: POP.2 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:F.141, B:F.183, B:K.215 Hydrogen bonds: B:T.51, B:N.105, B:N.105, B:G.182, B:K.215, B:S.216 Water bridges: B:T.51, B:S.211, B:S.211, B:S.216 Salt bridges: B:D.177 pi-Cation interactions: B:K.215, B:R.249

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.2: 5 residues within 4Å: Chain B: I.9, N.11, R.249, H.251 Ligands: PT1.3 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.11, B:S.50 Water bridges: B:T.51, B:D.86, B:R.249 Salt bridges: B:R.249, B:H.251, B:H.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stogios, P.J., Crystal structure of dihydropteroate synthase H182G mutant (folP-SMZ_B27) from soil uncultured bacterium in complex with pteroic acid. To Be Published

Release Date

2022-06-15

Peptides

folP-SMZ_B27: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

folP-SMZ_B27