SMTL ID : 8d74.1

Cryo-EM structure of human CNTF signaling complex: model containing the interaction core region

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.205 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 5 residues within 4Å: Chain C: P.87, R.88, E.89, H.167, N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain D: S.330, N.363, T.365, T.378 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 6 residues within 4Å: Chain D: E.360, I.361, N.382, T.384, E.385, T.471 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain D: N.259 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 1 residues within 4Å: Chain D: N.199 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 1 residues within 4Å: Chain A: N.109 No protein-ligand interaction detected (PLIP) NAG.8: 4 residues within 4Å: Chain A: T.319, Y.322, T.324, N.368 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.322 NAG.9: 3 residues within 4Å: Chain A: N.135, E.179, N.180 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain A: L.342, N.361 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.361 NAG.11: 3 residues within 4Å: Chain A: E.345, N.357, K.386 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.345 Hydrogen bonds: A:N.357 NAG.12: 1 residues within 4Å: Chain C: N.120 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, Y. et al., Structural insights into the assembly of gp130 family cytokine signaling complexes. Sci Adv (2023)

Release Date

2023-03-29

Peptides

Interleukin-6 receptor subunit beta: A
Ciliary neurotrophic factor: B
Ciliary neurotrophic factor receptor subunit alpha: C
Leukemia inhibitory factor receptor: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
C

D
B

Interleukin-6 receptor subunit beta

Ciliary neurotrophic factor

Ciliary neurotrophic factor receptor subunit alpha

Leukemia inhibitory factor receptor

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