SMTL ID : 8d8i.1

Crystal structure of Reverb alpha in complex with synthetic agonist

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x QFX: (4S)-6-[([1,1'-biphenyl]-2-yl)oxy]-3-chloro[1,2,4]triazolo[4,3-b]pyridazine(Non-covalent)

QFX.1: 20 residues within 4Å: Chain A: F.62, S.65, F.66, F.100, L.103, M.104, F.107, L.110, F.111, V.118, M.119, F.120, L.121, M.134, M.136, L.139, L.140, M.143, L.230 Chain B: L.7 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.62, A:F.66, A:F.100, A:L.103, A:F.107, A:F.107, A:L.110, A:F.111, A:V.118, A:L.139, A:L.140 Hydrogen bonds: A:L.121 pi-Stacking: A:F.107, A:F.107, A:F.120 Halogen bonds: A:F.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Murray, M.H. et al., Structural basis of synthetic agonist activation of the nuclear receptor REV-ERB. Nat Commun (2022)

Release Date

2022-12-14

Peptides

Nuclear receptor subfamily 1 group D member 1: A
Nuclear receptor corepressor 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclear receptor subfamily 1 group D member 1

Nuclear receptor corepressor 1