SMTL ID : 8d9o.1

De Novo Photosynthetic Reaction Center Protein in Apo-State

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

monomer

Ligands

11 x CD: CADMIUM ION(Non-covalent)(Non-functional Binders)

CD.1: 1 residues within 4Å: Chain A: E.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.8, A:E.8, H2O.1, H2O.4 CD.2: 1 residues within 4Å: Chain A: E.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.4, A:E.4 CD.3: 5 residues within 4Å: Chain A: E.64, E.135, H.138, E.161 Ligands: CD.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.64, A:E.135, A:H.138, A:E.161, A:E.161 CD.4: 5 residues within 4Å: Chain A: E.34, E.64, H.67, E.135 Ligands: CD.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.34, A:H.67, A:E.135, A:E.135, H2O.2 CD.5: 2 residues within 4Å: Chain A: H.9, H.110 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.9, A:H.110, H2O.3, H2O.4 CD.6: 1 residues within 4Å: Chain A: E.87 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.87, H2O.1 CD.7: 1 residues within 4Å: Chain A: Q.83 No protein-ligand interaction detected (PLIP) CD.8: 1 residues within 4Å: Chain A: E.170 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.170, A:E.170, H2O.3 CD.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) CD.10: 2 residues within 4Å: Chain A: E.62, E.65 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.62, A:E.62, A:E.65, H2O.1 CD.11: 2 residues within 4Å: Chain A: E.69, E.72 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.69, A:E.72, H2O.1, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ennist, N.M. et al., Rational design of photosynthetic reaction center protein maquettes. Front Mol Biosci (2022)

Release Date

2022-09-28

Peptides

Reaction Center Maquette: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reaction Center Maquette

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