SMTL ID : 8dam.1

nbF3:nbE8:CaV beta subunit 1b complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: T.210, R.211 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.210, A:R.211, A:R.211 SO4.3: 3 residues within 4Å: Chain B: Q.40, E.45, R.46 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.40, B:R.46 Salt bridges: B:R.46 SO4.4: 4 residues within 4Å: Chain C: R.28, T.29, F.30, S.31 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:T.29, C:F.30, C:S.31 Water bridges: C:K.32, C:N.33 Salt bridges: C:R.28 SO4.5: 3 residues within 4Å: Chain C: T.113, A.114, H.115 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:H.115 Water bridges: C:A.114, C:A.114 Salt bridges: C:H.115

1 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.2: 4 residues within 4Å: Chain B: A.62, D.63, S.64, R.105 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.63, B:D.63, B:S.64, B:S.64, B:R.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Morgenstern, T.J. et al., Selective posttranslational inhibition of Ca V beta 1 -associated voltage-dependent calcium channels with a functionalized nanobody. Nat Commun (2022)

Release Date

2022-12-21

Peptides

Voltage-dependent L-type calcium channel subunit beta-1: A
nanobody F3: B
Nanobody E8: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Voltage-dependent L-type calcium channel subunit beta-1

nanobody F3

Nanobody E8