SMTL ID : 8daq.1

CryoEM structure of Western equine encephalitis virus VLP

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-4-mer

Ligands

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: G.138, N.139 No protein-ligand interaction detected (PLIP) NAG.2: 4 residues within 4Å: Chain B: K.194, N.195, S.211, T.212 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.211, B:S.211 NAG.3: 2 residues within 4Å: Chain C: G.138, N.139 No protein-ligand interaction detected (PLIP) NAG.4: 4 residues within 4Å: Chain D: K.194, N.195, S.211, T.212 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.211, D:S.211 NAG.5: 2 residues within 4Å: Chain E: G.138, N.139 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain F: K.194, N.195, S.211, T.212 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:S.211, F:S.211 NAG.7: 2 residues within 4Å: Chain G: G.138, N.139 No protein-ligand interaction detected (PLIP) NAG.8: 4 residues within 4Å: Chain H: K.194, N.195, S.211, T.212 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:S.211, H:S.211

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zimmerman, O. et al., Alternate repeat domain usage in an alphavirus entry receptor enables host species expansion. To Be Published

Release Date

2023-12-20

Peptides

E1 envelope glycoprotein: ACEG
E2 envelope glycoprotein: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

Membrane

We predict this structure to be a membrane protein.
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E1 envelope glycoprotein

E2 envelope glycoprotein

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