- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 7 residues within 4Å:- Chain A: E.307, S.308, V.309, S.310
- Chain E: S.47, R.49
- Chain F: R.104
6 PLIP interactions:1 interactions with chain F, 4 interactions with chain A, 1 interactions with chain E- Salt bridges: F:R.104, E:R.49
- Hydrogen bonds: A:E.307, A:S.308, A:V.309, A:S.310
PO4.6: 7 residues within 4Å:- Chain B: E.307, S.308, V.309, S.310
- Chain C: R.104
- Chain D: S.47, R.49
5 PLIP interactions:1 interactions with chain C, 3 interactions with chain B, 1 interactions with chain D- Salt bridges: C:R.104, D:R.49
- Hydrogen bonds: B:V.309, B:S.310, B:S.310
PO4.10: 7 residues within 4Å:- Chain A: S.47, R.49
- Chain B: R.104
- Chain C: E.307, S.308, V.309, S.310
5 PLIP interactions:1 interactions with chain A, 3 interactions with chain C, 1 interactions with chain B- Salt bridges: A:R.49, B:R.104
- Hydrogen bonds: C:S.308, C:V.309, C:S.310
PO4.14: 7 residues within 4Å:- Chain D: E.307, S.308, V.309, S.310
- Chain E: R.104
- Chain F: S.47, R.49
5 PLIP interactions:3 interactions with chain D, 1 interactions with chain E, 1 interactions with chain F- Hydrogen bonds: D:V.309, D:S.310, D:S.310
- Salt bridges: E:R.104, F:R.49
PO4.18: 7 residues within 4Å:- Chain C: S.47, R.49
- Chain D: R.104
- Chain E: E.307, S.308, V.309, S.310
6 PLIP interactions:4 interactions with chain E, 1 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: E:S.308, E:S.308, E:V.309, E:S.310
- Salt bridges: C:R.49, D:R.104
PO4.22: 7 residues within 4Å:- Chain A: R.104
- Chain B: S.47, R.49
- Chain F: E.307, S.308, V.309, S.310
5 PLIP interactions:3 interactions with chain F, 1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: F:V.309, F:S.310, F:S.310
- Salt bridges: A:R.104, B:R.49
- 12 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 2 residues within 4Å:- Chain A: H.130
- Ligands: PRP.1
3 PLIP interactions:1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:H.130, H2O.1, H2O.1
MG.4: 2 residues within 4Å:- Chain A: D.171
- Ligands: PRP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:D.171
MG.7: 2 residues within 4Å:- Chain B: H.130
- Ligands: PRP.5
3 PLIP interactions:1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:H.130, H2O.1, H2O.1
MG.8: 2 residues within 4Å:- Chain B: D.171
- Ligands: PRP.5
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:D.171
MG.11: 2 residues within 4Å:- Chain C: H.130
- Ligands: PRP.9
3 PLIP interactions:1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: C:H.130, H2O.1, H2O.1
MG.12: 2 residues within 4Å:- Chain C: D.171
- Ligands: PRP.9
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:D.171
MG.15: 2 residues within 4Å:- Chain D: H.130
- Ligands: PRP.13
3 PLIP interactions:1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: D:H.130, H2O.1, H2O.1
MG.16: 2 residues within 4Å:- Chain D: D.171
- Ligands: PRP.13
1 PLIP interactions:1 interactions with chain D- Metal complexes: D:D.171
MG.19: 2 residues within 4Å:- Chain E: H.130
- Ligands: PRP.17
3 PLIP interactions:1 interactions with chain E, 2 Ligand-Water interactions- Metal complexes: E:H.130, H2O.1, H2O.1
MG.20: 2 residues within 4Å:- Chain E: D.171
- Ligands: PRP.17
1 PLIP interactions:1 interactions with chain E- Metal complexes: E:D.171
MG.23: 2 residues within 4Å:- Chain F: H.130
- Ligands: PRP.21
3 PLIP interactions:1 interactions with chain F, 2 Ligand-Water interactions- Metal complexes: F:H.130, H2O.1, H2O.1
MG.24: 2 residues within 4Å:- Chain F: D.171
- Ligands: PRP.21
1 PLIP interactions:1 interactions with chain F- Metal complexes: F:D.171
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hvorecny, K.L. et al., Human PRPS1 filaments stabilize allosteric sites to regulate activity. Nat.Struct.Mol.Biol. (2023)
- Release Date
- 2023-02-15
- Peptides
- Ribose-phosphate pyrophosphokinase 1: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-hexamer
- Ligands
- 6 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 6 x PO4: PHOSPHATE ION(Non-functional Binders)
- 12 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Hvorecny, K.L. et al., Human PRPS1 filaments stabilize allosteric sites to regulate activity. Nat.Struct.Mol.Biol. (2023)
- Release Date
- 2023-02-15
- Peptides
- Ribose-phosphate pyrophosphokinase 1: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F