SMTL ID : 8dcc.1

SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 3 Bound to P2B-2F6 Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.10, N.14, Y.34 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dickey, T.H. et al., Design of the SARS-CoV-2 RBD vaccine antigen improves neutralizing antibody response. Sci Adv (2022)

Release Date

2022-07-06

Peptides

Spike protein S1: A
P2B-2F6 Fab light chain: B
P2B-2F6 Fab heavy chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
L

C
H

Spike protein S1

P2B-2F6 Fab light chain

P2B-2F6 Fab heavy chain

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