- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- monomer
- Ligands
- 1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)
- 1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 6 residues within 4Å:- Chain A: G.89, Y.90, I.94, G.113, Y.114, K.371
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.90, A:Y.114
- Water bridges: A:D.115, A:N.350
- Salt bridges: A:K.371
SO4.4: 5 residues within 4Å:- Chain A: D.115, G.219, S.220, H.223, R.258
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.220
- Salt bridges: A:H.223, A:R.258
SO4.5: 8 residues within 4Å:- Chain A: H.87, I.94, N.222, H.424, G.427, R.428, Y.471
- Ligands: 5GP.2
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.222, A:R.428
- Salt bridges: A:H.87, A:H.424
SO4.6: 3 residues within 4Å:- Chain A: S.431, R.432, K.433
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.431, A:R.432, A:K.433
- Salt bridges: A:R.432
SO4.7: 2 residues within 4Å:- Chain A: K.232, R.492
2 PLIP interactions:2 interactions with chain A- Salt bridges: A:K.232, A:R.492
SO4.8: 2 residues within 4Å:- Chain A: S.204, Q.205
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.205, A:Q.205
- Water bridges: A:R.206
SO4.9: 2 residues within 4Å:- Chain A: R.386, R.389
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.389
- Salt bridges: A:R.389
SO4.10: 4 residues within 4Å:- Chain A: R.43, P.74, G.75, I.76
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:G.75
- Salt bridges: A:R.43
SO4.11: 2 residues within 4Å:- Chain A: R.47, Y.79
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.47
SO4.12: 2 residues within 4Å:- Chain A: K.362, R.363
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.363
- Salt bridges: A:K.362, A:R.363
SO4.13: 3 residues within 4Å:- Chain A: R.277, R.280
- Ligands: SO4.14
4 PLIP interactions:4 interactions with chain A- Water bridges: A:R.277, A:R.277
- Salt bridges: A:R.277, A:R.280
SO4.14: 3 residues within 4Å:- Chain A: R.277, R.280
- Ligands: SO4.13
3 PLIP interactions:3 interactions with chain A- Water bridges: A:R.280
- Salt bridges: A:R.277, A:R.280
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jacewicz, A. et al., Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna (2022)
- Release Date
- 2022-10-12
- Peptides
- tRNA-splicing ligase RtcB: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.35 Å
- Oligo State
- monomer
- Ligands
- 1 x GLC- FRU: beta-D-fructofuranose-(2-1)-alpha-D-glucopyranose(Non-covalent)
- 1 x 5GP: GUANOSINE-5'-MONOPHOSPHATE(Covalent)
- 12 x SO4: SULFATE ION(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jacewicz, A. et al., Structures of RNA ligase RtcB in complexes with divalent cations and GTP. Rna (2022)
- Release Date
- 2022-10-12
- Peptides
- tRNA-splicing ligase RtcB: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B