SMTL ID : 8df7.1

Structure of M. kandleri topoisomerase V in complex with DNA. 38 base pair symmetric DNA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.52 Å

Oligo State

homo-dimer

Ligands

5 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: L.735, V.737, G.739, I.740 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:I.740 K.2: 1 residues within 4Å: Chain A: F.576 No protein-ligand interaction detected (PLIP) K.3: 3 residues within 4Å: Chain B: L.735, V.737, I.740 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:L.735, B:V.737, B:I.740 K.4: 3 residues within 4Å: Chain B: I.471, I.473, I.476 No protein-ligand interaction detected (PLIP) K.5: 3 residues within 4Å: Chain B: E.574, A.575, F.576 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Osterman, A. et al., Structures of topoisomerase V in complex with DNA reveal unusual DNA binding mode and novel relaxation mechanism. Elife (2022)

Release Date

2022-08-31

Peptides

Topoisomerase V: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Topoisomerase V

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