SMTL ID : 8dfp.1

Ectodomain of full-length KIT(DupA502,Y503)-SCF dimers

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-2-2-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: M.289, Y.291, N.300 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: Y.243, Y.291, N.293, N.294 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 3 residues within 4Å: Chain B: Y.243, Y.291, N.293 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 3 residues within 4Å: Chain B: M.289, Y.291, N.300 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: R.248, N.283 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain B: R.248, N.283, D.284 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Krimmer, S.G. et al., Cryo-EM analyses of KIT and oncogenic mutants reveal structural oncogenic plasticity and a target for therapeutic intervention. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-03-29

Peptides

Isoform 2 of Mast/stem cell growth factor receptor Kit: AB
Soluble KIT ligand: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Isoform 2 of Mast/stem cell growth factor receptor Kit

Soluble KIT ligand