SMTL ID : 8dfw.1

Crystal Structure of Human BTN2A1 in Complex With Vgamma9-Vdelta2 T Cell Receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-2-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1: 7 residues within 4Å: Chain A: P.13, N.95, G.96, H.114, L.115, V.116, Y.146 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.13, A:V.116

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 6 residues within 4Å: Chain B: P.13, N.95, G.96, H.114, L.115, Y.146 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.13

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 4 residues within 4Å: Chain C: N.137 Chain D: P.137, T.138, I.139 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 1 residues within 4Å: Chain A: N.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.89 NAG.5: 2 residues within 4Å: Chain A: N.21, H.88 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.21 NAG.6: 1 residues within 4Å: Chain B: N.89 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.89 NAG.7: 3 residues within 4Å: Chain B: P.156, N.191, V.208 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:V.208 Hydrogen bonds: B:N.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fulford, T.S. et al., Vgamma9-Vdelta2 T cells recognize butyrophilin 2A1 and 3A1 heteromers. To Be Published

Release Date

2023-07-05

Peptides

Butyrophilin subfamily 2 member A1: AB
T cell receptor delta variable chain: C
T cell receptor gamma variable chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
G

Butyrophilin subfamily 2 member A1

T cell receptor delta variable chain

T cell receptor gamma variable chain

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