SMTL ID : 8dg9.1

Cryo-EM Structure of RSV prefusion F trimer in complex with three MxR Fabs

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: S.493, N.496, E.497, N.500 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.493, A:E.497 NAG.2: 2 residues within 4Å: Chain A: Q.26, N.27 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.27 NAG.3: 4 residues within 4Å: Chain D: S.493, N.496, E.497, N.500 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:N.496 Hydrogen bonds: D:N.496 NAG.4: 2 residues within 4Å: Chain D: Q.26, N.27 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:Q.26 Hydrogen bonds: D:N.27 NAG.5: 4 residues within 4Å: Chain G: S.493, N.496, E.497, N.500 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:S.493 NAG.6: 1 residues within 4Å: Chain G: N.27 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Caban, M. et al., Cross-protective antibodies against common endemic respiratory viruses. Nat Commun (2023)

Release Date

2023-02-22

Peptides

Fusion glycoprotein F0: ADG
mAb MxR Heavy Chain, VH region: BEH
mAb MxR Light Chain, VL region: CFI

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
B

G
C

B
H

E
F

H
D

C
L

F
G

I
E

Fusion glycoprotein F0

mAb MxR Heavy Chain, VH region

mAb MxR Light Chain, VL region