SMTL ID : 8dgu.1

Crystal structure of SARS-CoV-2 spike stem helix peptide in complex with Fab of broadly neutralizing antibody CC25.106 isolated from a vaccinated COVID-19 convalescent

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

hetero-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain B: T.30, D.31, Y.32, Y.33, K.52, P.53, S.54 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.54, B:S.54, B:S.54 Water bridges: B:Y.33 GOL.2: 4 residues within 4Å: Chain B: V.2, Y.27, Y.32, R.98 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Y.32, B:Y.32, B:R.98, B:R.98

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhou, P. et al., Broadly neutralizing anti-S2 antibodies protect against all three human betacoronaviruses that cause deadly disease. Immunity (2023)

Release Date

2023-01-25

Peptides

Spike protein S2': A
Antibody CC25.106 Fab heavy chain: B
Antibody CC25.106 Fab light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Spike protein S2'

Antibody CC25.106 Fab heavy chain

Antibody CC25.106 Fab light chain

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