- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)
3PG.2: 12 residues within 4Å:- Chain A: K.186, E.189, H.278, R.279, H.311, L.320, S.364, G.365, Q.386
- Chain B: N.108
- Ligands: MG.1, 3PG.3
15 PLIP interactions:14 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:S.364, A:S.364, A:Q.386, B:N.108
- Water bridges: A:H.278, A:R.279, A:R.279, A:H.282, A:H.311, A:G.313, A:S.364
- Salt bridges: A:H.278, A:R.279, A:H.311, A:H.311
3PG.3: 19 residues within 4Å:- Chain A: V.158, K.160, K.162, K.186, D.188, E.189, K.319, G.365, G.366, Q.386, V.387, G.388, G.389
- Chain B: E.46, T.51, W.52, N.108
- Ligands: MG.1, 3PG.2
17 PLIP interactions:15 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:K.160, A:G.366, A:Q.386, A:G.388, A:G.389, B:T.51, B:N.108
- Water bridges: A:K.319, A:G.365, A:L.367, A:L.367, A:G.390
- Salt bridges: A:K.160, A:K.160, A:K.162, A:K.319, A:K.319
3PG.9: 11 residues within 4Å:- Chain A: N.108
- Chain B: K.186, E.189, H.278, R.279, H.311, L.320, S.364, G.365
- Ligands: MG.8, 3PG.10
17 PLIP interactions:16 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.364, B:S.364, B:S.364, B:S.364, B:Q.386, A:N.108
- Water bridges: B:R.279, B:R.279, B:R.279, B:R.279, B:H.282, B:G.313, B:S.364
- Salt bridges: B:H.278, B:R.279, B:H.311, B:H.311
3PG.10: 18 residues within 4Å:- Chain A: E.46, T.51, W.52, N.108
- Chain B: K.160, K.162, K.186, D.188, E.189, K.319, G.365, G.366, Q.386, V.387, G.388, G.389
- Ligands: MG.8, 3PG.9
19 PLIP interactions:16 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:K.160, B:E.189, B:G.366, B:Q.386, B:G.388, B:G.389, A:T.51, A:T.51, A:N.108
- Water bridges: B:K.319, B:G.365, B:L.367, B:L.367, B:G.390
- Salt bridges: B:K.160, B:K.160, B:K.162, B:K.319, B:K.319
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 7 residues within 4Å:- Chain A: Q.124, L.125, P.126, K.127, Q.351, N.352, H.354
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.352, A:H.354
- Water bridges: A:Q.124, A:Q.124, A:K.127, A:N.352
GOL.5: 4 residues within 4Å:- Chain A: S.193, A.195, R.198
- Chain B: P.95
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.193, A:R.198, A:R.198
- Water bridges: A:S.193
GOL.6: 3 residues within 4Å:- Chain A: E.200, E.204
- Ligands: ACT.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.200
- Water bridges: A:E.204
GOL.11: 4 residues within 4Å:- Chain B: G.370, N.371, R.437, T.439
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:G.370, B:T.439
- Water bridges: B:G.316, B:T.439
- 2 x ACT: ACETATE ION(Non-functional Binders)
ACT.7: 3 residues within 4Å:- Chain A: E.200, R.236
- Ligands: GOL.6
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:E.200
- Hydrogen bonds: A:R.236
ACT.12: 6 residues within 4Å:- Chain B: A.242, G.245, N.246, Y.271, D.272, L.273
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.242
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Q. et al., Crystal structure of a type III Rubisco in complex with its product 3-phosphoglycerate. Proteins (2023)
- Release Date
- 2022-11-30
- Peptides
- Ribulose bisphosphate carboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x 3PG: 3-PHOSPHOGLYCERIC ACID(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 2 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, Q. et al., Crystal structure of a type III Rubisco in complex with its product 3-phosphoglycerate. Proteins (2023)
- Release Date
- 2022-11-30
- Peptides
- Ribulose bisphosphate carboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
D