SMTL ID : 8dhu.2 (1 other biounit)

Crystal structure of LARP-DM15 from Drosophila melanogaster bound to m7GpppC

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 91P: [[(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-7-methyl-6-oxidanylidene-1~{H}-purin-9-ium-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [[(2~{R},3~{S},4~{R},5~{R})-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate(Non-covalent)

91P.1: 14 residues within 4Å: Chain A: F.49, R.52, R.84, S.87, Y.88, E.91, Y.116, E.119, K.120, W.122, A.123, F.124, Y.127 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:R.52, A:R.52, A:R.84, A:S.87, A:Y.88, A:Y.116, A:E.119, A:K.120 Salt bridges: A:E.91, A:K.120 pi-Stacking: A:Y.88, A:Y.127, A:Y.127

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: 91P.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, E. et al., Comparative analysis of the LARP1 C-terminal DM15 region through Coelomate evolution. To Be Published

Release Date

2024-01-17

Peptides

La-related protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

La-related protein 1

Related Entries With Identical Sequence