SMTL ID : 8di5.1

Cryo-EM structure of SARS-CoV-2 Beta (B.1.351) spike protein in complex with VH domain F6 (focused refinement of RBD and VH F6)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.338, G.339, N.343 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C. et al., Potent and broad neutralization of SARS-CoV-2 variants of concern (VOCs) including omicron sub-lineages BA.1 and BA.2 by biparatopic human VH domains. Iscience (2022)

Release Date

2022-08-24

Peptides

Spike glycoprotein: A
VH F6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

Spike glycoprotein

VH F6

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