- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
- 20 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
PX4.2: 15 residues within 4Å:- Chain A: T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227, L.230
- Chain C: M.206, P.210, W.213, F.225
- Ligands: PX4.5
Ligand excluded by PLIPPX4.3: 12 residues within 4Å:- Chain A: D.92, P.93, W.94, F.97, F.125, V.138, S.139, I.142
- Chain C: L.154, M.155, F.158, V.222
Ligand excluded by PLIPPX4.4: 9 residues within 4Å:- Chain A: I.115, L.122
- Chain C: F.162, L.169, R.173, Y.209, Y.211, A.212, P.218
Ligand excluded by PLIPPX4.5: 16 residues within 4Å:- Chain A: T.156, L.157, Y.160, T.180, L.181, G.182, F.185
- Chain D: V.40, V.41, G.44, I.45, G.48, S.52, L.124, L.127
- Ligands: PX4.2
Ligand excluded by PLIPPX4.6: 10 residues within 4Å:- Chain A: L.194, F.221, T.224, F.225, I.228
- Chain D: T.193, L.194, M.227
- Ligands: PX4.22, PX4.30
Ligand excluded by PLIPPX4.10: 15 residues within 4Å:- Chain B: T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227, L.230
- Chain D: M.206, P.210, W.213, F.225
- Ligands: PX4.13
Ligand excluded by PLIPPX4.11: 12 residues within 4Å:- Chain B: D.92, P.93, W.94, F.97, F.125, V.138, S.139, I.142
- Chain D: L.154, M.155, F.158, V.222
Ligand excluded by PLIPPX4.12: 9 residues within 4Å:- Chain B: I.115, L.122
- Chain D: F.162, L.169, R.173, Y.209, Y.211, A.212, P.218
Ligand excluded by PLIPPX4.13: 16 residues within 4Å:- Chain B: T.156, L.157, Y.160, T.180, L.181, G.182, F.185
- Chain C: V.40, V.41, G.44, I.45, G.48, S.52, L.124, L.127
- Ligands: PX4.10
Ligand excluded by PLIPPX4.14: 10 residues within 4Å:- Chain B: L.194, F.221, T.224, F.225, I.228
- Chain C: T.193, L.194, M.227
- Ligands: PX4.22, PX4.30
Ligand excluded by PLIPPX4.18: 15 residues within 4Å:- Chain B: M.206, P.210, W.213, F.225
- Chain C: T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227, L.230
- Ligands: PX4.21
Ligand excluded by PLIPPX4.19: 12 residues within 4Å:- Chain B: L.154, M.155, F.158, V.222
- Chain C: D.92, P.93, W.94, F.97, F.125, V.138, S.139, I.142
Ligand excluded by PLIPPX4.20: 9 residues within 4Å:- Chain B: F.162, L.169, R.173, Y.209, Y.211, A.212, P.218
- Chain C: I.115, L.122
Ligand excluded by PLIPPX4.21: 16 residues within 4Å:- Chain A: V.40, V.41, G.44, I.45, G.48, S.52, L.124, L.127
- Chain C: T.156, L.157, Y.160, T.180, L.181, G.182, F.185
- Ligands: PX4.18
Ligand excluded by PLIPPX4.22: 10 residues within 4Å:- Chain A: T.193, L.194, M.227
- Chain C: L.194, F.221, T.224, F.225, I.228
- Ligands: PX4.6, PX4.14
Ligand excluded by PLIPPX4.26: 15 residues within 4Å:- Chain A: M.206, P.210, W.213, F.225
- Chain D: T.156, F.159, T.180, G.182, E.183, F.185, Y.186, F.189, M.227, L.230
- Ligands: PX4.29
Ligand excluded by PLIPPX4.27: 12 residues within 4Å:- Chain A: L.154, M.155, F.158, V.222
- Chain D: D.92, P.93, W.94, F.97, F.125, V.138, S.139, I.142
Ligand excluded by PLIPPX4.28: 9 residues within 4Å:- Chain A: F.162, L.169, R.173, Y.209, Y.211, A.212, P.218
- Chain D: I.115, L.122
Ligand excluded by PLIPPX4.29: 16 residues within 4Å:- Chain B: V.40, V.41, G.44, I.45, G.48, S.52, L.124, L.127
- Chain D: T.156, L.157, Y.160, T.180, L.181, G.182, F.185
- Ligands: PX4.26
Ligand excluded by PLIPPX4.30: 10 residues within 4Å:- Chain B: T.193, L.194, M.227
- Chain D: L.194, F.221, T.224, F.225, I.228
- Ligands: PX4.6, PX4.14
Ligand excluded by PLIP- 8 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
CPS.7: 12 residues within 4Å:- Chain A: A.140, S.143, V.144, I.234, A.238, I.241, L.242, K.245
- Chain C: A.233, V.236, D.237
- Ligands: CPS.8
8 PLIP interactions:6 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:V.144, A:I.234, A:I.241, A:L.242, C:A.233, C:V.236
- Hydrogen bonds: A:S.143, A:S.143
CPS.8: 13 residues within 4Å:- Chain A: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Chain D: I.137, A.140
- Ligands: CPS.7
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.144, A:V.151, A:L.230, A:D.237, A:I.241
- Hydrogen bonds: A:V.144, A:G.147
CPS.15: 12 residues within 4Å:- Chain B: A.140, S.143, V.144, I.234, A.238, I.241, L.242, K.245
- Chain D: A.233, V.236, D.237
- Ligands: CPS.16
8 PLIP interactions:2 interactions with chain D, 6 interactions with chain B- Hydrophobic interactions: D:A.233, D:V.236, B:V.144, B:I.234, B:I.241, B:L.242
- Hydrogen bonds: B:S.143, B:S.143
CPS.16: 13 residues within 4Å:- Chain B: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Chain C: I.137, A.140
- Ligands: CPS.15
7 PLIP interactions:7 interactions with chain B- Hydrophobic interactions: B:V.144, B:V.151, B:L.230, B:D.237, B:I.241
- Hydrogen bonds: B:V.144, B:G.147
CPS.23: 12 residues within 4Å:- Chain B: A.233, V.236, D.237
- Chain C: A.140, S.143, V.144, I.234, A.238, I.241, L.242, K.245
- Ligands: CPS.24
8 PLIP interactions:6 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:V.144, C:I.234, C:I.241, C:L.242, B:A.233, B:V.236
- Hydrogen bonds: C:S.143, C:S.143
CPS.24: 13 residues within 4Å:- Chain A: I.137, A.140
- Chain C: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Ligands: CPS.23
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:V.144, C:V.151, C:L.230, C:D.237, C:I.241
- Hydrogen bonds: C:V.144, C:G.147
CPS.31: 12 residues within 4Å:- Chain A: A.233, V.236, D.237
- Chain D: A.140, S.143, V.144, I.234, A.238, I.241, L.242, K.245
- Ligands: CPS.32
8 PLIP interactions:6 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:V.144, D:I.234, D:I.241, D:L.242, A:A.233, A:V.236
- Hydrogen bonds: D:S.143, D:S.143
CPS.32: 13 residues within 4Å:- Chain B: I.137, A.140
- Chain D: V.144, G.147, M.148, V.151, L.230, A.233, I.234, D.237, A.238, I.241
- Ligands: CPS.31
7 PLIP interactions:7 interactions with chain D- Hydrophobic interactions: D:V.144, D:V.151, D:L.230, D:D.237, D:I.241
- Hydrogen bonds: D:V.144, D:G.147
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wisedchaisri, G. et al., Structural basis for severe pain caused by mutations in the voltage sensors of sodium channel NaV1.7. J.Gen.Physiol. (2023)
- Release Date
- 2023-10-25
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.54 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x BGC: beta-D-glucopyranose(Non-covalent)
- 20 x PX4: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)
- 8 x CPS: 3-[(3-CHOLAMIDOPROPYL)DIMETHYLAMMONIO]-1-PROPANESULFONATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wisedchaisri, G. et al., Structural basis for severe pain caused by mutations in the voltage sensors of sodium channel NaV1.7. J.Gen.Physiol. (2023)
- Release Date
- 2023-10-25
- Peptides
- Ion transport protein: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
A - Membrane
-
We predict this structure to be a membrane protein.