SMTL ID : 8djh.1

Ternary complex of SUMO1 with a phosphomimetic SIM of PML and zinc

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

hetero-1-1-mer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: E.11, D.15 Chain B: D.17 5 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: A:E.11, A:D.15, B:D.17, B:D.17, H2O.1 ZN.2: 4 residues within 4Å: Chain A: K.23, E.84, E.85 Chain B: R.28 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.84, A:E.85, H2O.3 ZN.3: 4 residues within 4Å: Chain A: K.25, E.33, H.35 Chain B: E.9 5 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.9, B:E.9, A:E.33, A:H.35, H2O.5 ZN.4: 2 residues within 4Å: Chain A: E.67, D.86 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:D.86, H2O.1, H2O.1, H2O.2, H2O.3, H2O.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lussier-Price, M. et al., Zinc controls PML nuclear body formation through regulation of a paralog specific auto-inhibition in SUMO1. Nucleic Acids Res. (2022)

Release Date

2022-08-10

Peptides

Small ubiquitin-related modifier 1: A
PML 4SD: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Small ubiquitin-related modifier 1

PML 4SD

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