SMTL ID : 8dkb.2 (7 other biounits)

Crystal Structure of human YEATS4 in complex with Pfizer small molecule compound 3b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.58 Å

Oligo State

monomer

Ligands

1 x SJI: N-ethyl-1-{(3S,4S)-1-[(1-hydroxycyclohexyl)methyl]-3-methylpiperidin-4-yl}-2-methyl-1H-benzimidazole-5-carboxamide(Non-covalent)

SJI.1: 11 residues within 4Å: Chain A: H.43, H.71, S.73, Y.74, G.92, W.93, G.94, E.95, F.96, E.97, L.117 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:Y.74, A:W.93, A:W.93, A:F.96, A:L.117 Hydrogen bonds: A:S.73, A:S.73, A:Y.74, A:W.93, A:G.94 pi-Stacking: A:H.71, A:H.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Londregan, A.T. et al., Discovery of High-Affinity Small-Molecule Binders of the Epigenetic Reader YEATS4. J.Med.Chem. (2023)

Release Date

2023-01-11

Peptides

YEATS domain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

YEATS domain-containing protein 4

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