SMTL ID : 8dly.1

Cryo-EM structure of SARS-CoV-2 Epsilon (B.1.429) spike protein in complex with VH ab6 (focused refinement of NTD and VH ab6)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: F.338, G.339, F.342, N.343 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.342 Hydrogen bonds: A:N.343

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mannar, D. et al., SARS-CoV-2 variants of concern: spike protein mutational analysis and epitope for broad neutralization. Nat Commun (2022)

Release Date

2022-08-31

Peptides

Spike glycoprotein: A
VH ab6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
H

Spike glycoprotein

VH ab6

Related Entries With Identical Sequence