SMTL ID : 8dma.1

Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2 (focused refinement of RBD and ACE2)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: F.335, D.336, F.339, N.340, V.364, F.371 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.339, A:V.364 Hydrogen bonds: A:D.336, A:D.336, A:D.336 NAG.2: 4 residues within 4Å: Chain B: N.53, E.57, N.58, R.340 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.53, B:E.57, B:N.58 NAG.3: 3 residues within 4Å: Chain B: K.416, S.420, N.546 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.546

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saville, J.W. et al., Structural analysis of receptor engagement and antigenic drift within the BA.2 spike protein. Cell Rep (2023)

Release Date

2023-02-08

Peptides

Spike glycoprotein: A
Angiotensin-converting enzyme 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Spike glycoprotein

Angiotensin-converting enzyme 2

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