SMTL ID : 8dmf.1

Cryo-EM structure of the ribosome-bound Bacteroides thetaiotaomicron EF-G2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: K.22, T.23 Ligands: GTP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.23

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 17 residues within 4Å: Chain A: S.17, S.18, G.19, S.20, G.21, K.22, T.23, T.24, V.42, Y.60, S.61, P.82, Q.135, D.137, G.259, G.260 Ligands: MG.1 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.19, A:S.20, A:G.21, A:K.22, A:T.23, A:T.23, A:T.24, A:S.61, A:S.61, A:P.82, A:Q.135, A:G.260 Salt bridges: A:D.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Han, W. et al., Gut colonization by Bacteroides requires translation by an EF-G paralog lacking GTPase activity. Embo J. (2022)

Release Date

2023-01-04

Peptides

Tetracycline resistance protein TetQ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tetracycline resistance protein TetQ

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