SMTL ID : 8dmk.1

Cryo-EM reveals the molecular basis of laminin polymerization and LN-lamininopathies

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)(Non-covalent)

NAG.1: 5 residues within 4Å: Chain A: N.18, E.83, W.86, T.88, R.207 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.88 Hydrogen bonds: A:E.83, A:E.83, A:R.207 NAG.2: 1 residues within 4Å: Chain A: N.52 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:N.52 NAG.3: 2 residues within 4Å: Chain B: T.25, N.92 No protein-ligand interaction detected (PLIP) NAG.4: 2 residues within 4Å: Chain C: F.23, N.24 No protein-ligand interaction detected (PLIP) NAG.5: 7 residues within 4Å: Chain C: S.95, S.96, N.98, Y.127, W.136, S.214, T.216 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.96, C:N.98, C:S.214

1 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain C: F.69, L.70, D.72, T.80, S.242 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:F.69, C:D.72, C:D.72, C:T.80, C:S.242

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kulczyk, A.W. et al., Cryo-EM reveals the molecular basis oflaminin polymerization and LN-lamininopathies. Nat Commun (2023)

Release Date

2023-02-01

Peptides

Laminin subunit alpha-1: A
Laminin subunit beta-1: B
Laminin subunit gamma-1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

Laminin subunit alpha-1

Laminin subunit beta-1

Laminin subunit gamma-1