SMTL ID : 8dn1.1

Q108K:K40L:T51C:T53A:R58L:Q38F:Q4F mutant of hCRBPII bound to synthetic fluorophore CM1V at pH 7.2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.32 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: T.7, E.9 No protein-ligand interaction detected (PLIP) GOL.2: 2 residues within 4Å: Chain A: D.63, F.64 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.63, A:F.64

1 x RH6: (2E)-3-[7-(diethylamino)-2-oxo-2H-1-benzopyran-3-yl]prop-2-enal, bound form(Covalent)

RH6.3: 16 residues within 4Å: Chain A: F.16, Y.19, L.40, I.42, F.49, C.51, A.53, Y.60, V.62, F.64, L.77, W.106, K.108, L.117, L.119, Q.128 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.42, A:Y.60, A:Y.60, A:Y.60, A:L.77, A:K.108, A:L.119 Salt bridges: A:K.108 pi-Stacking: A:W.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maity, S. et al., Light controlled reversible Michael addition of cysteine: a new tool for dynamic site-specific labeling of proteins. Analyst (2023)

Release Date

2023-02-01

Peptides

Retinol-binding protein 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Retinol-binding protein 2

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