SMTL ID : 8dnn.1

Crystal structure of neutralizing antibody 80 in complex with SARS-CoV-2 receptor binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.12 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: F.20, G.21, N.25 No protein-ligand interaction detected (PLIP) NAG.2: 5 residues within 4Å: Chain D: F.20, G.21, F.24, N.25, S.53 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:F.20, D:F.24 Hydrogen bonds: D:S.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Burn Aschner, C. et al., A multi-specific, multi-affinity antibody platform neutralizes sarbecoviruses and confers protection against SARS-CoV-2 in vivo. Sci Transl Med (2023)

Release Date

2023-05-24

Peptides

Spike protein S1: AD
80 FAB HEAVY CHAIN: BE
80 FAB LIGHT CHAIN: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

B
B

E
E

C
C

F
F

Spike protein S1

80 FAB HEAVY CHAIN

80 FAB LIGHT CHAIN

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