SMTL ID : 8dnq.1 (1 other biounit)

BRD2-BD1 in complex with cyclic peptide 2.2B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: Y.22, V.26, K.117, S.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.22, A:S.120 GOL.2: 6 residues within 4Å: Chain A: H.24, K.25, M.28, K.29, W.32, K.68 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.24, A:K.25 GOL.3: 4 residues within 4Å: Chain B: W.11, T.12, V.13, P.15 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.12, B:V.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Franck, C. et al., Discovery and characterization of cyclic peptides selective for the C-terminal bromodomains of BET family proteins. Structure (2023)

Release Date

2023-07-19

Peptides

Bromodomain-containing protein 2: A
Cyclic peptide 2.2B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Bromodomain-containing protein 2

Cyclic peptide 2.2B

Related Entries With Identical Sequence