SMTL ID : 8dnr.1

Prefusion-stabilized Hendra virus fusion protein

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-trimer

Ligands

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: G.67, L.71, N.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.74 NAG.2: 3 residues within 4Å: Chain A: N.42, N.130 Chain C: Q.169 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: N.389, G.405, K.406 Chain C: I.93 No protein-ligand interaction detected (PLIP) NAG.4: 3 residues within 4Å: Chain A: N.439, Q.443 Chain C: Q.434 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:Q.434 Hydrogen bonds: C:Q.434 NAG.5: 3 residues within 4Å: Chain B: G.67, L.71, N.74 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.71 Hydrogen bonds: B:N.74 NAG.6: 3 residues within 4Å: Chain A: Q.169 Chain B: N.42, N.130 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:N.130 Hydrogen bonds: B:N.42, A:Q.169 NAG.7: 3 residues within 4Å: Chain B: N.389, G.405, K.406 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.406 NAG.8: 4 residues within 4Å: Chain A: Q.434, M.438 Chain B: N.439, Q.443 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:Q.443 NAG.9: 3 residues within 4Å: Chain C: G.67, L.71, N.74 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.74 NAG.10: 3 residues within 4Å: Chain B: Q.169 Chain C: N.42, N.130 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrophobic interactions: C:N.130 Hydrogen bonds: C:N.42, B:Q.169 NAG.11: 4 residues within 4Å: Chain B: Q.434, M.438 Chain C: N.439, Q.443 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Q.434 Hydrogen bonds: B:Q.434 NAG.12: 3 residues within 4Å: Chain C: N.389, G.405, K.406 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.406

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Byrne, P.O. et al., Prefusion stabilization of the Hendra and Langya virus F proteins. J.Virol. (2024)

Release Date

2023-07-19

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
E

Fusion glycoprotein F0