SMTL ID : 8do8.1 (1 other biounit)

Crystal structure ATG9 HDIR in complex with the ATG13:ATG101 HORMA dimer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-2-1-mer

Ligands

16 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: K.125, S.133, D.134 Ligands: GOL.5, GOL.6 Ligand excluded by PLIP GOL.2: 5 residues within 4Å: Chain A: E.121, Y.123, C.136, K.211 Ligands: GOL.6 Ligand excluded by PLIP GOL.3: 4 residues within 4Å: Chain A: E.177 Chain B: T.170, V.171, R.172 Ligand excluded by PLIP GOL.4: 2 residues within 4Å: Chain A: E.90, D.93 Ligand excluded by PLIP GOL.5: 5 residues within 4Å: Chain A: K.125, D.134, D.195, N.196 Ligands: GOL.1 Ligand excluded by PLIP GOL.6: 5 residues within 4Å: Chain A: S.133, D.134, C.136 Ligands: GOL.1, GOL.2 Ligand excluded by PLIP GOL.7: 2 residues within 4Å: Chain A: W.130 Ligands: GOL.9 Ligand excluded by PLIP GOL.8: 4 residues within 4Å: Chain A: D.74, V.75, D.76 Chain B: K.36 Ligand excluded by PLIP GOL.9: 3 residues within 4Å: Chain A: W.130, P.131 Ligands: GOL.7 Ligand excluded by PLIP GOL.10: 6 residues within 4Å: Chain A: E.166, E.170, I.173 Chain B: V.134, P.136, Y.189 Ligand excluded by PLIP GOL.11: 8 residues within 4Å: Chain A: F.82, T.83, C.169 Chain B: R.133, T.135, P.136, Y.138, R.139 Ligand excluded by PLIP GOL.12: 8 residues within 4Å: Chain A: H.51, S.53, T.54 Chain B: N.52, N.119, S.122, L.123, K.126 Ligand excluded by PLIP GOL.13: 3 residues within 4Å: Chain B: Y.155, F.156, E.158 Ligand excluded by PLIP GOL.14: 5 residues within 4Å: Chain B: D.14, L.73, P.74, A.75, R.78 Ligand excluded by PLIP GOL.15: 6 residues within 4Å: Chain A: T.69 Chain B: R.40, S.42, T.46, D.49, A.54 Ligand excluded by PLIP GOL.16: 1 residues within 4Å: Chain B: K.109 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, X. et al., Structural basis for ATG9A recruitment to the ULK1 complex in mitophagy initiation. Sci Adv (2023)

Release Date

2022-11-23

Peptides

Autophagy-related protein 101: AC
Autophagy-related protein 13: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

C
F

B
D

Autophagy-related protein 101

Autophagy-related protein 13

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