SMTL ID : 8dof.1

Pseudomonas aeruginosa MurC with WYH9-2-P - OSA_001044

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: R.55, T.157, N.158, A.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.55, A:R.55 EDO.2: 2 residues within 4Å: Chain A: T.245, D.251 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.245, A:T.245 EDO.3: 4 residues within 4Å: Chain A: A.252, D.253, R.255, P.273 No protein-ligand interaction detected (PLIP) EDO.7: 4 residues within 4Å: Chain B: R.55, T.157, N.158, A.159 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.55, B:R.55 EDO.8: 2 residues within 4Å: Chain B: T.245, D.251 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.245 EDO.9: 4 residues within 4Å: Chain B: A.252, D.253, R.255, P.273 No protein-ligand interaction detected (PLIP)

2 x T4L: (2R)-2-cyclohexyl-2-[(4-{[5-(propan-2-yl)-1H-pyrazol-3-yl]amino}-1H-pyrazolo[3,4-d]pyrimidin-6-yl)amino]ethan-1-ol(Non-covalent)

T4L.4: 10 residues within 4Å: Chain A: H.124, G.125, T.189, N.190, C.226, Y.246, L.287, H.288, L.291, N.292 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.124, A:L.287, A:L.291, A:L.291 Hydrogen bonds: A:N.190, A:Y.246, A:N.292, A:N.292 Water bridges: A:G.125, A:G.125, A:D.229 pi-Stacking: A:H.288 T4L.10: 10 residues within 4Å: Chain B: H.124, G.125, T.189, N.190, C.226, Y.246, L.287, H.288, L.291, N.292 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:H.124, B:L.287, B:L.291, B:L.291 Hydrogen bonds: B:N.190, B:N.292, B:N.292 Water bridges: B:G.125, B:T.128 pi-Stacking: B:H.288

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 5 residues within 4Å: Chain A: T.123, H.124, G.125, K.126, T.127 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.123, A:G.125, A:K.126, A:T.127, A:T.127 Water bridges: A:T.127, A:T.128 Salt bridges: A:K.126 SO4.6: 4 residues within 4Å: Chain A: M.284, P.285, H.288, N.289 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.289 Salt bridges: A:H.288 SO4.11: 5 residues within 4Å: Chain B: T.123, H.124, G.125, K.126, T.127 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:T.123, B:G.125, B:K.126, B:T.127, B:E.170 Water bridges: B:T.127, B:T.127, B:T.128 Salt bridges: B:K.126 SO4.12: 4 residues within 4Å: Chain B: M.284, P.285, H.288, N.289 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.289 Salt bridges: B:H.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horanyi, P.S. et al., Pseudomonas aeruginosa MurC with WYH9-2-P - OSA_001044. To Be Published

Release Date

2022-08-17

Peptides

UDP-N-acetylmuramate--L-alanine ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UDP-N-acetylmuramate--L-alanine ligase