SMTL ID : 8dol.1

Mechanism of regulation of the Helicobacter pylori Cagbeta ATPase by CagZ

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.86, S.87, G.88, K.89, G.90 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.86, A:S.87, A:G.88, A:K.89, A:G.90 Salt bridges: A:K.89 SO4.3: 5 residues within 4Å: Chain B: R.86, S.87, G.88, K.89, G.90 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:P.84, B:R.86, B:S.87, B:G.88, B:K.89, B:G.90 Salt bridges: B:K.89 SO4.5: 6 residues within 4Å: Chain C: P.84, R.86, S.87, G.88, K.89, G.90 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:P.84, C:R.86, C:S.87, C:G.88, C:K.89, C:G.90 Salt bridges: C:K.89 SO4.7: 5 residues within 4Å: Chain D: R.86, S.87, G.88, K.89, G.90 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.86, D:S.87, D:G.88, D:K.89, D:G.90 Salt bridges: D:K.89 SO4.9: 5 residues within 4Å: Chain E: R.86, S.87, G.88, K.89, G.90 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:R.86, E:S.87, E:G.88, E:K.89, E:G.90 Salt bridges: E:K.89 SO4.11: 5 residues within 4Å: Chain F: R.86, S.87, G.88, K.89, G.90 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:R.86, F:G.88, F:K.89, F:G.90 Salt bridges: F:K.89

6 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: A.32, S.33, Y.477, L.504 No protein-ligand interaction detected (PLIP) PEG.4: 4 residues within 4Å: Chain B: A.32, W.34, Y.477, L.504 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.32 PEG.6: 4 residues within 4Å: Chain C: A.32, S.33, Y.477, L.504 No protein-ligand interaction detected (PLIP) PEG.8: 4 residues within 4Å: Chain D: A.32, S.33, W.34, Y.477 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:W.34 PEG.10: 3 residues within 4Å: Chain E: S.33, W.34, L.504 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:W.34 PEG.12: 2 residues within 4Å: Chain F: W.34, Y.477 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, X. et al., Mechanism of regulation of the Helicobacter pylori Cag beta ATPase by CagZ. Nat Commun (2023)

Release Date

2023-02-15

Peptides

Cag pathogenicity island protein (Cag5): ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Cag pathogenicity island protein (Cag5)