SMTL ID : 8dpd.1

superfolder GFP Tyr74pCNPhe mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.51 Å

Oligo State

monomer

Ligands

1 x CO2: CARBON DIOXIDE(Non-covalent)

CO2.1: 6 residues within 4Å: Chain A: L.43, X.66, Q.68, T.202, E.221, V.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.68, A:T.202

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: E.18, L.19, D.20, S.29, V.30, R.31, T.50 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.19, A:D.20, A:V.30, A:T.50 EDO.3: 7 residues within 4Å: Chain A: R.108, A.109, E.110, K.112, R.121, I.122, E.123 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.108, A:E.110, A:E.123, A:E.123 Water bridges: A:E.110 EDO.4: 6 residues within 4Å: Chain A: K.106, T.107, R.108, E.123, L.124, K.125 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.123 Water bridges: A:K.125 EDO.5: 9 residues within 4Å: Chain A: K.53, L.54, V.56, P.57, W.58, H.138, K.208, D.215 Ligands: MG.7 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.54, A:L.54, A:W.58, A:K.208 Water bridges: A:H.216

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 4 residues within 4Å: Chain A: P.88, F.113, E.114, G.115 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.115

4 x MG: MAGNESIUM ION(Non-covalent)

MG.7: 5 residues within 4Å: Chain A: P.57, W.58, P.59, Y.142 Ligands: EDO.5 No protein-ligand interaction detected (PLIP) MG.8: 5 residues within 4Å: Chain A: N.143, F.144, S.204, V.205, L.206 No protein-ligand interaction detected (PLIP) MG.9: 2 residues within 4Å: Chain A: S.29, T.51 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.29 MG.10: 6 residues within 4Å: Chain A: V.92, E.94, K.157, Q.183, N.184, T.185 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Phillips-Piro, C.M. et al., Superfolder GFP Tyr74pCNPhe mutant. To Be Published

Release Date

2022-08-31

Peptides

Superfolder green fluorescent protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Superfolder green fluorescent protein