SMTL ID : 8dq9.1

Crystal structure of GDP bound 3-dehydroquinate dehydratase I from Klebsiella oxytoca

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: R.185, L.212 Ligand excluded by PLIP CL.3: 2 residues within 4Å: Chain B: R.192, L.212 Ligand excluded by PLIP

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.58, E.60, C.83, C.92 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.58, A:C.83, A:C.92 ZN.4: 4 residues within 4Å: Chain B: H.58, E.60, C.83, C.92 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.58, B:C.83, B:C.92

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.5: 14 residues within 4Å: Chain B: S.201, S.202, A.203, I.240, D.241, S.242, Q.243, R.245, H.286, L.289, T.311, L.312, A.315, P.345 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:S.201, B:S.202, B:S.202, B:A.203, B:S.242, B:S.242, B:Q.243, B:R.245, B:R.245, B:H.286 Water bridges: B:L.312 Salt bridges: B:H.286, B:H.286

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, L. et al., Crystal structure of GDP bound 3-dehydroquinate dehydratase I from Klebsiella oxytoca. To be published

Release Date

2022-07-27

Peptides

3-dehydroquinate dehydratase I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-dehydroquinate dehydratase I

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