- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CIT: CITRIC ACID(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 25 residues within 4Å:- Chain A: I.166, I.167, P.168, W.169, K.193, A.195, E.196, F.225, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, E.249, I.250, V.253, I.254, T.349, Q.350, K.353, E.400, F.402
19 PLIP interactions:19 interactions with chain A- Hydrogen bonds: A:I.167, A:K.193, A:E.196, A:S.247, A:E.249, A:Q.350, A:K.353, A:E.400, A:E.400
- Water bridges: A:W.169, A:W.169, A:W.169, A:G.226, A:S.247, A:S.247, A:T.248, A:V.253, A:K.353, A:E.400
NAD.10: 28 residues within 4Å:- Chain B: I.166, I.167, P.168, W.169, N.170, K.193, A.195, E.196, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, I.250, V.253, I.254, E.269, L.270, G.271, S.303, E.400, F.402, L.428, F.466
- Ligands: 1PE.12
16 PLIP interactions:16 interactions with chain B- Hydrophobic interactions: B:P.168, B:T.245
- Hydrogen bonds: B:I.167, B:K.193, B:E.196, B:S.247, B:E.269, B:S.303, B:E.400
- Water bridges: B:W.169, B:W.169, B:Q.197, B:G.226, B:T.248, B:E.400, B:E.400
NAD.17: 25 residues within 4Å:- Chain C: I.166, I.167, P.168, W.169, K.193, A.195, E.196, F.225, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, E.249, I.250, V.253, I.254, T.349, Q.350, K.353, E.400, F.402
18 PLIP interactions:18 interactions with chain C- Hydrogen bonds: C:I.167, C:K.193, C:E.196, C:S.247, C:E.249, C:Q.350, C:K.353, C:E.400
- Water bridges: C:W.169, C:W.169, C:W.169, C:G.226, C:S.247, C:S.247, C:T.248, C:V.253, C:K.353, C:E.400
NAD.25: 28 residues within 4Å:- Chain D: I.166, I.167, P.168, W.169, N.170, K.193, A.195, E.196, G.226, P.227, G.230, A.231, F.244, T.245, G.246, S.247, I.250, V.253, I.254, E.269, L.270, G.271, S.303, E.400, F.402, L.428, F.466
- Ligands: 1PE.27
15 PLIP interactions:15 interactions with chain D- Hydrophobic interactions: D:P.168, D:T.245
- Hydrogen bonds: D:I.167, D:K.193, D:E.196, D:S.247, D:E.269, D:E.269, D:S.303, D:E.400
- Water bridges: D:W.169, D:W.169, D:Q.197, D:G.226, D:T.248
- 4 x NA: SODIUM ION(Non-functional Binders)
NA.3: 4 residues within 4Å:- Chain A: T.40, V.41, D.110, Q.197
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:V.41, A:D.110, A:D.110
NA.11: 4 residues within 4Å:- Chain B: T.40, V.41, D.110, Q.197
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.41, B:Q.197
- Water bridges: B:T.40
NA.18: 4 residues within 4Å:- Chain C: T.40, V.41, D.110, Q.197
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:V.41, C:D.110
- Water bridges: C:T.40
NA.26: 4 residues within 4Å:- Chain D: T.40, V.41, D.110, Q.197
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:V.41, D:V.41, D:D.110
- 18 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
1PE.4: 3 residues within 4Å:- Chain A: E.318, E.321, R.322
Ligand excluded by PLIP1PE.5: 11 residues within 4Å:- Chain A: V.121, M.125, F.171, L.174, M.175, F.293, F.297, C.302, D.458, F.460, F.466
Ligand excluded by PLIP1PE.6: 4 residues within 4Å:- Chain A: E.416, G.419, R.420, N.423
Ligand excluded by PLIP1PE.7: 5 residues within 4Å:- Chain A: E.313, Y.316, D.317, D.389, K.410
Ligand excluded by PLIP1PE.8: 5 residues within 4Å:- Chain A: D.283, W.286, N.455
- Chain B: K.495
- Chain D: D.438
Ligand excluded by PLIP1PE.12: 12 residues within 4Å:- Chain B: V.121, M.125, F.171, L.174, W.178, F.293, F.297, C.302, D.458, F.460, F.466
- Ligands: NAD.10
Ligand excluded by PLIP1PE.13: 3 residues within 4Å:- Chain B: D.392, K.398, N.423
Ligand excluded by PLIP1PE.14: 5 residues within 4Å:- Chain B: V.332, G.333, N.334, A.375, A.376
Ligand excluded by PLIP1PE.15: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP1PE.19: 3 residues within 4Å:- Chain C: E.318, E.321, R.322
Ligand excluded by PLIP1PE.20: 11 residues within 4Å:- Chain C: V.121, M.125, F.171, L.174, M.175, F.293, F.297, C.302, D.458, F.460, F.466
Ligand excluded by PLIP1PE.21: 4 residues within 4Å:- Chain C: E.416, G.419, R.420, N.423
Ligand excluded by PLIP1PE.22: 5 residues within 4Å:- Chain C: E.313, Y.316, D.317, D.389, K.410
Ligand excluded by PLIP1PE.23: 5 residues within 4Å:- Chain B: D.438
- Chain C: D.283, W.286, N.455
- Chain D: K.495
Ligand excluded by PLIP1PE.27: 12 residues within 4Å:- Chain D: V.121, M.125, F.171, L.174, W.178, F.293, F.297, C.302, D.458, F.460, F.466
- Ligands: NAD.25
Ligand excluded by PLIP1PE.28: 3 residues within 4Å:- Chain D: D.392, K.398, N.423
Ligand excluded by PLIP1PE.29: 5 residues within 4Å:- Chain D: V.332, G.333, N.334, A.375, A.376
Ligand excluded by PLIP1PE.30: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, S.Y. et al., Crystal structure of human ALDH2 in complex with NAD+ and PEG MME 550. To be published
- Release Date
- 2023-08-30
- Peptides
- Aldehyde dehydrogenase, mitochondrial: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CIT: CITRIC ACID(Non-functional Binders)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x NA: SODIUM ION(Non-functional Binders)
- 18 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Xu, S.Y. et al., Crystal structure of human ALDH2 in complex with NAD+ and PEG MME 550. To be published
- Release Date
- 2023-08-30
- Peptides
- Aldehyde dehydrogenase, mitochondrial: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
AD
B