SMTL ID : 8drj.1

Apo B2 dimer (H60/H100/H104) formed in the presence of Cu(II)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

hetero-1-1-mer

Ligands

2 x HEC: HEME C(Covalent)

HEC.1: 18 residues within 4Å: Chain A: L.3, E.4, M.7, E.8, L.10, N.11, L.14, P.45, P.46, F.61, G.64, F.65, K.95, C.98, C.101, H.102, Y.105, R.106 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:M.7, A:L.10, A:N.11, A:L.14, A:P.45, A:F.65, A:F.65, A:F.65, A:R.106 Hydrogen bonds: A:E.4 pi-Cation interactions: A:R.106 Metal complexes: A:H.102 HEC.2: 18 residues within 4Å: Chain B: L.3, E.4, M.7, L.10, N.11, M.33, P.45, P.46, F.61, G.64, F.65, L.68, T.97, C.98, C.101, H.102, Y.105, R.106 15 PLIP interactions: 15 interactions with chain B, Hydrophobic interactions: B:L.3, B:M.7, B:P.45, B:F.61, B:F.65, B:F.65, B:L.68, B:T.97, B:R.106, B:R.106 Hydrogen bonds: B:E.4, B:E.4 pi-Cation interactions: B:R.106, B:R.106 Metal complexes: B:H.102

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 3 residues within 4Å: Chain B: H.60, H.63, H.100 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Salt bridges: B:H.60, B:H.63, B:H.100, A:K.77 SO4.4: 1 residues within 4Å: Chain B: R.106 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choi, T.S. et al., Design of a Flexible, Zn-Selective Protein Scaffold that Displays Anti-Irving-Williams Behavior. J.Am.Chem.Soc. (2022)

Release Date

2022-10-12

Peptides

Soluble cytochrome b562: A
Soluble cytochrome b562: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
A

Soluble cytochrome b562

Soluble cytochrome b562

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