SMTL ID : 8ds1.4 (5 other biounits)

Structure of SARS-CoV-2 Mpro in complex with nsp12-nsp13 (C12) cut site sequence

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

homo-dimer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 4 residues within 4Å: Chain A: N.221, F.223, D.263, A.266 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.221, A:N.221

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: R.4, K.5 Chain B: R.4, K.5 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.4, A:R.4, A:K.5, B:R.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, J. et al., X-ray crystallographic characterization of the SARS-CoV-2 main protease polyprotein cleavage sites essential for viral processing and maturation. Nat Commun (2022)

Release Date

2022-09-28

Peptides

3C-like proteinase nsp5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

3C-like proteinase nsp5

Related Entries With Identical Sequence