SMTL ID : 8dsg.1 (3 other biounits)

P411-PFA carbene transferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 23 residues within 4Å: Chain A: K.70, L.76, L.87, A.88, W.97, I.154, F.262, A.265, T.270, L.273, V.328, V.329, F.332, P.393, F.394, G.395, R.399, A.400, S.401, P.402, G.403, F.406, A.407 22 PLIP interactions: 22 interactions with chain A, Hydrophobic interactions: A:L.87, A:A.88, A:I.154, A:F.262, A:A.265, A:L.273, A:V.328, A:V.329, A:V.329, A:F.394, A:P.402, A:F.406 Hydrogen bonds: A:R.399 Water bridges: A:K.70, A:K.70, A:S.333, A:S.333, A:S.333 Salt bridges: A:K.70, A:K.70, A:R.399 Metal complexes: A:S.401

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 8 residues within 4Å: Chain A: L.134, N.135, E.138, H.139, I.140, K.448, A.449 Ligands: EDO.3 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.449 EDO.3: 5 residues within 4Å: Chain A: W.131, E.132, L.134, A.449 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.134 Water bridges: A:S.451

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: Y.306, K.310, Q.405, H.409 Ligands: BTB.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.405 Salt bridges: A:K.310, A:H.409 SO4.5: 3 residues within 4Å: Chain A: R.168, D.169, Q.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.169, A:D.169, A:Q.170

1 x BTB: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-covalent)

BTB.6: 7 residues within 4Å: Chain A: V.309, K.310, L.312, G.316, L.408, T.412 Ligands: SO4.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.309, A:K.310, A:G.316

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, J. et al., Chemodivergent C(sp 3 )-H and C(sp 2 )-H Cyanomethylation Using Engineered Carbene Transferases. Nat Catal (2023)

Release Date

2023-03-08

Peptides

Cytochrome P450-BM3 variant P411-PFA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytochrome P450-BM3 variant P411-PFA

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