SMTL ID : 8dtn.1 (4 other biounits)

The complex of nanobody 6101 with BCL11A ZF6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-4-4-mer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: Y.32, Y.101 No protein-ligand interaction detected (PLIP) MG.4: 3 residues within 4Å: Chain E: K.65 Chain G: S.57 Chain H: K.25 No protein-ligand interaction detected (PLIP) MG.5: 3 residues within 4Å: Chain A: R.19 Chain E: K.76, Y.80 No protein-ligand interaction detected (PLIP) MG.7: 2 residues within 4Å: Chain F: K.25 Chain G: K.65 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.6, C.9, H.22, H.27 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.6, B:C.9, B:H.22, B:H.27 ZN.3: 4 residues within 4Å: Chain D: C.6, C.9, H.22, H.27 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:C.6, D:C.9, D:H.22, D:H.27 ZN.6: 4 residues within 4Å: Chain F: C.6, C.9, H.22, H.27 4 PLIP interactions: 4 interactions with chain F Metal complexes: F:C.6, F:C.9, F:H.22, F:H.27 ZN.8: 4 residues within 4Å: Chain H: C.6, C.9, H.22, H.27 4 PLIP interactions: 4 interactions with chain H Metal complexes: H:C.6, H:C.9, H:H.22, H:H.27

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, M. et al., Evolution of nanobodies specific for BCL11A. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-02-01

Peptides

Nanobody 6101: ACEG
B-cell lymphoma/leukemia 11A: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

G
G

B
B

D
D

F
F

H
H

Nanobody 6101

B-cell lymphoma/leukemia 11A

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