SMTL ID : 8dtu.1

The complex of nanobody 5344N74D with BCL11A ZF6.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLN- VAL- GLN- LEU- VAL- LYS: Nanobody 5344N74D(Non-covalent)

GLN-VAL-GLN-LEU-VAL-LYS.1: 18 residues within 4Å: Chain A: R.13, L.14, S.15, C.16, A.17, A.18, F.23, W.30, Y.88, Y.89, C.90, A.91, S.102, W.103, G.104, Q.105, G.106, T.107 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.18, A:W.30 Hydrogen bonds: A:S.15, A:S.15, A:A.17, A:A.17, A:A.17, A:S.102, A:G.104, A:Q.105 Water bridges: A:C.90

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: C.4, C.7, H.20, H.25 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.4, B:C.7, B:H.20, B:H.25

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, M. et al., Evolution of nanobodies specific for BCL11A. Proc.Natl.Acad.Sci.USA (2023)

Release Date

2023-02-01

Peptides

Nanobody 5344N74D: A
B-cell lymphoma/leukemia 11A: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Nanobody 5344N74D

B-cell lymphoma/leukemia 11A