SMTL ID : 8dvr.1

Cryo-EM structure of RIG-I bound to the end of p3SLR30 (+AMPPNP)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.810, C.813, C.864, C.869 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.810, A:C.864, A:C.869

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 12 residues within 4Å: Chain A: H.830, H.847, K.851, F.853, K.858, K.861, D.872, G.874, I.875, K.888 Chain B: G.1, C.61 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:H.830, A:H.830, A:K.858 Salt bridges: A:H.847, A:K.858, A:K.861, A:K.861, A:K.861, A:K.888 pi-Stacking: A:F.853 pi-Cation interactions: A:F.853

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, W. et al., The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands. Mol.Cell (2022)

Release Date

2022-11-02

Peptides

Antiviral innate immune response receptor RIG-I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Antiviral innate immune response receptor RIG-I

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