SMTL ID : 8dx4.4 (3 other biounits)

Clostridioides difficile R20291 minor pilin - PilW fused with Maltose Binding Protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

7 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: D.288, S.307, E.310, E.311 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.307 EDO.3: 2 residues within 4Å: Chain A: A.84, D.88 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: Y.91, K.306 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.306, A:K.306 Water bridges: A:E.310 EDO.5: 3 residues within 4Å: Chain A: Y.211, W.231 Ligands: PEG.6 No protein-ligand interaction detected (PLIP) EDO.7: 2 residues within 4Å: Chain A: N.368 Ligands: EDO.9 No protein-ligand interaction detected (PLIP) EDO.8: 1 residues within 4Å: Chain A: D.237 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.315, A:R.317 EDO.9: 2 residues within 4Å: Chain A: N.350 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Q.356

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 9 residues within 4Å: Chain A: E.23, V.24, K.27, N.283, Y.284, T.287, E.289, G.290, A.293 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.6: 2 residues within 4Å: Chain A: Y.156 Ligands: EDO.5 3 PLIP interactions: 3 interactions with chain A Water bridges: A:E.112, A:E.154, A:E.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronish, L.A. et al., Recognition of extracellular DNA by type IV pili promotes biofilm formation by Clostridioides difficile. J.Biol.Chem. (2022)

Release Date

2022-09-21

Peptides

Maltodextrin-binding protein,Putative pilin protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Maltodextrin-binding protein,Putative pilin protein

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