SMTL ID : 8dxu.1

Fab arms of antibodies GAR03 and 10G4 bound to the receptor binding domain of SARS-CoV-2 in a 1:1:1 complex.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-1-1-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: F.6, G.7, F.10, N.11, L.36 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.10, A:L.36 Hydrogen bonds: A:N.11

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain D: N.35, W.50, M.99 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain D: T.58 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rouet, R. et al., Broadly neutralizing SARS-CoV-2 antibodies through epitope-based selection from convalescent patients. Nat Commun (2023)

Release Date

2023-01-18

Peptides

Spike protein S1: A
Heavy chain of Fab arm of antibody 10G4: B
Light chain of Fab arm of antibody 10G4: C
Heavy chain of Fab arm of antibody GAR03: D
Light chain of Fab arm of antibody GAR03: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
R

B
H

C
L

D
A

E
B

Spike protein S1

Heavy chain of Fab arm of antibody 10G4

Light chain of Fab arm of antibody 10G4

Heavy chain of Fab arm of antibody GAR03

Light chain of Fab arm of antibody GAR03

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