SMTL ID : 8e0q.1

Structure of the human UBR5 HECT-type E3 ubiquitin ligase in a C2 symmetric dimeric form

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.1187, C.1216, C.1219, C.1240 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1187, A:C.1216, A:C.1219, A:C.1240 ZN.2: 5 residues within 4Å: Chain A: C.1219, C.1223, C.1242, C.1248, T.1250 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1219, A:C.1223, A:C.1242, A:C.1248 ZN.3: 4 residues within 4Å: Chain A: C.1204, C.1207, H.1224, H.1227 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.1204, A:C.1207, A:H.1224, A:H.1227 ZN.4: 4 residues within 4Å: Chain B: C.1187, C.1216, C.1219, C.1240 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1187, B:C.1216, B:C.1219, B:C.1240 ZN.5: 5 residues within 4Å: Chain B: C.1219, C.1223, C.1242, C.1248, T.1250 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1219, B:C.1223, B:C.1242, B:C.1248 ZN.6: 4 residues within 4Å: Chain B: C.1204, C.1207, H.1224, H.1227 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1204, B:C.1207, B:H.1224, B:H.1227

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of the human UBR5 E3 ubiquitin ligase. Structure (2023)

Release Date

2023-04-19

Peptides

E3 ubiquitin-protein ligase UBR5: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E3 ubiquitin-protein ligase UBR5