SMTL ID : 8e15.1

A computationally stabilized hMPV F protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain B: E.247, I.250, N.251, T.254 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.4: 4 residues within 4Å: Chain D: E.247, I.250, N.251, T.254 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.7: 4 residues within 4Å: Chain F: E.247, I.250, N.251, T.254 No protein-ligand interaction detected (PLIP)

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: D.54, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.57 NAG.3: 5 residues within 4Å: Chain B: N.70, R.73, M.87, S.90 Chain E: P.64 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.70, B:R.73 NAG.5: 2 residues within 4Å: Chain C: D.54, N.57 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.57 NAG.6: 5 residues within 4Å: Chain A: P.64 Chain D: N.70, R.73, M.87, S.90 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.70, D:R.73 NAG.8: 2 residues within 4Å: Chain E: D.54, N.57 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.57 NAG.9: 5 residues within 4Å: Chain C: P.64 Chain F: N.70, R.73, M.87, S.90 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.70, F:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gonzalez, K.J. et al., A general computational design strategy for stabilizing viral class I fusion proteins. Biorxiv (2023)

Release Date

2023-04-12

Peptides

F2 protein: ACE
F1 protein with Fibritin peptide: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

C
F

E
F

B
G

D
G

F
G

F2 protein

F1 protein with Fibritin peptide