SMTL ID : 8e23.2 (1 other biounit)

Human DNA polymerase theta in complex with allosteric inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: Y.417, D.618 Ligands: DG3.2 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.618, H2O.1

1 x DG3: 2'-3'-DIDEOXYGUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

DG3.2: 12 residues within 4Å: Chain A: S.418, Q.419, E.421, R.465, Q.466, Q.470, Y.473, D.618 Chain B: C.4, C.5 Chain C: G.13 Ligands: MG.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.421, A:Y.473 Hydrogen bonds: A:Q.419, A:Q.419, A:Q.466 Salt bridges: A:R.465

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bubenik, M. et al., Identification of RP-6685 , an Orally Bioavailable Compound that Inhibits the DNA Polymerase Activity of Pol theta. J.Med.Chem. (2022)

Release Date

2022-09-28

Peptides

DNA polymerase theta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

DNA polymerase theta

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