SMTL ID : 8e2q.2 (1 other biounit)

Crystal structure of TadAC-1.17 in a complex with ssDNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.34 Å

Oligo State

homo-dimer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: V.35, L.36, N.37, N.38, D.77, T.79 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.37, A:N.37, A:N.38, A:N.38, A:T.79 GOL.3: 7 residues within 4Å: Chain B: V.35, L.36, N.37, N.38, D.77, A.78, T.79 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.37, B:N.38, B:D.77, B:T.79

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: H.57, E.59, C.87, C.90 Chain C: X.9 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.57, A:C.87, A:C.90 ZN.4: 6 residues within 4Å: Chain B: H.57, E.59, C.87, M.89, C.90 Chain D: X.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.57, B:C.87, B:C.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lam, D.K. et al., Improved cytosine base editors generated from TadA variants. Nat.Biotechnol. (2023)

Release Date

2023-01-11

Peptides

tRNA-specific adenosine deaminase 1.17: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

tRNA-specific adenosine deaminase 1.17

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