SMTL ID : 8e3d.1 (2 other biounits)

ZBTB7A Zinc Finger Domain Bound to DNA Duplex Containing CAST sequence (#11)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: Q.93, C.94, D.95 2 PLIP interactions: 2 interactions with chain A Water bridges: A:Q.93, A:D.95 EDO.2: 8 residues within 4Å: Chain A: K.22, R.25, R.47, Q.48, D.49 Chain B: G.13 Chain C: A.9, C.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.25, A:Q.48, A:D.49 EDO.7: 5 residues within 4Å: Chain B: A.20, C.21 Chain C: G.1, G.2, T.3 No protein-ligand interaction detected (PLIP)

4 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.38, C.41, H.54, H.58 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.38, A:C.41, A:H.54, A:H.58 ZN.4: 4 residues within 4Å: Chain A: C.10, C.13, H.26, H.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.10, A:C.13, A:H.26, A:H.30 ZN.5: 4 residues within 4Å: Chain A: C.66, C.69, H.82, H.86 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.66, A:C.69, A:H.82, A:H.86 ZN.6: 4 residues within 4Å: Chain A: C.94, C.97, H.110, C.116 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.94, A:C.97, A:H.110, A:C.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, R. et al., Structural basis for transcription factor ZBTB7A recognition of DNA and effects of ZBTB7A somatic mutations that occur in human acute myeloid leukemia. J.Biol.Chem. (2023)

Release Date

2023-02-08

Peptides

Zinc finger and BTB domain-containing protein 7A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zinc finger and BTB domain-containing protein 7A

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