SMTL ID : 8e5i.1

Old Yellow Enzyme 1 (NpOYE1) from Neptuniibacter sp.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 21 residues within 4Å: Chain A: A.22, P.23, L.24, T.25, A.56, Q.98, H.174, N.177, R.226, M.263, F.267, N.290, M.291, G.292, F.312, G.313, V.314, P.315, F.340, Y.341 Ligands: PEG.4 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.24, A:V.314, A:F.340, A:Y.341 Hydrogen bonds: A:P.23, A:T.25, A:T.25, A:A.56, A:Q.98, A:Q.98, A:N.177, A:R.226, A:R.226, A:N.290, A:G.292, A:G.313, A:V.314 Water bridges: A:M.291, A:Y.293, A:Y.293, A:Y.293

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: P.195, N.202 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.202 EDO.5: 3 residues within 4Å: Chain A: K.82, H.89, G.167 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.82 Water bridges: A:K.82, A:D.86, A:K.164, A:G.167, A:F.168

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: R.142, E.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.143 Water bridges: A:E.143

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 7 residues within 4Å: Chain A: T.25, F.66, H.174, N.177, Y.179, Y.341 Ligands: FMN.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.174, A:N.177

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Frkic, R.L. et al., Old Yellow Enzyme 1 (NpOYE1) from Neptuniibacter sp. To Be Published

Release Date

2023-08-30

Peptides

Alkene reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Alkene reductase