SMTL ID : 8e6q.1

Human TRPM2 ion channel in 1 mM ADPR

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

8 x APR: ADENOSINE-5-DIPHOSPHORIBOSE(Non-covalent)

APR.1: 16 residues within 4Å: Chain A: T.174, G.175, G.176, A.177, K.178, N.179, S.210, T.212, Y.295, R.302, G.332, G.333, P.334, G.335, T.336, R.358 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:G.175, A:A.177, A:K.178, A:N.179, A:S.210, A:R.302, A:G.333, A:G.333, A:G.335, A:T.336, A:T.336 Salt bridges: A:R.302, A:R.358 APR.2: 7 residues within 4Å: Chain A: L.1379, L.1381, S.1382, D.1431, R.1433, Y.1485, N.1487 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.1431, A:R.1433, A:Y.1485, A:Y.1485, A:N.1487 Salt bridges: A:R.1433, A:R.1433 pi-Stacking: A:Y.1485 APR.3: 16 residues within 4Å: Chain B: T.174, G.175, G.176, A.177, K.178, N.179, S.210, T.212, Y.295, R.302, G.332, G.333, P.334, G.335, T.336, R.358 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:G.175, B:A.177, B:K.178, B:N.179, B:S.210, B:R.302, B:G.333, B:G.333, B:G.335, B:T.336, B:T.336 Salt bridges: B:R.302, B:R.358 APR.4: 7 residues within 4Å: Chain B: L.1379, L.1381, S.1382, D.1431, R.1433, Y.1485, N.1487 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:D.1431, B:R.1433, B:Y.1485, B:Y.1485, B:N.1487 Salt bridges: B:R.1433, B:R.1433 pi-Stacking: B:Y.1485 APR.5: 16 residues within 4Å: Chain C: T.174, G.175, G.176, A.177, K.178, N.179, S.210, T.212, Y.295, R.302, G.332, G.333, P.334, G.335, T.336, R.358 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:G.175, C:A.177, C:K.178, C:N.179, C:S.210, C:R.302, C:G.333, C:G.333, C:G.335, C:T.336, C:T.336 Salt bridges: C:R.302, C:R.358 APR.6: 7 residues within 4Å: Chain C: L.1379, L.1381, S.1382, D.1431, R.1433, Y.1485, N.1487 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:D.1431, C:R.1433, C:Y.1485, C:Y.1485, C:N.1487 Salt bridges: C:R.1433, C:R.1433 pi-Stacking: C:Y.1485 APR.7: 16 residues within 4Å: Chain D: T.174, G.175, G.176, A.177, K.178, N.179, S.210, T.212, Y.295, R.302, G.332, G.333, P.334, G.335, T.336, R.358 13 PLIP interactions: 13 interactions with chain D Hydrogen bonds: D:G.175, D:A.177, D:K.178, D:N.179, D:S.210, D:R.302, D:G.333, D:G.333, D:G.335, D:T.336, D:T.336 Salt bridges: D:R.302, D:R.358 APR.8: 7 residues within 4Å: Chain D: L.1379, L.1381, S.1382, D.1431, R.1433, Y.1485, N.1487 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:D.1431, D:R.1433, D:Y.1485, D:Y.1485, D:N.1487 Salt bridges: D:R.1433, D:R.1433 pi-Stacking: D:Y.1485

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., A unified mechanism for human TRPM2 activation, desensitization and inhibition. To Be Published

Release Date

2024-08-14

Peptides

Transient receptor potential cation channel subfamily M member 2: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Membrane

We predict this structure to be a membrane protein.
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Transient receptor potential cation channel subfamily M member 2

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