SMTL ID : 8e7m.1

Structure of the human ACE2 receptor in complex with antibody Fab fragment, 05B04

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 6 residues within 4Å: Chain A: K.26, D.30, N.90, T.92, V.93, Q.96 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.92, A:V.93 Hydrogen bonds: A:D.30, A:D.30, A:D.30 NAG-NAG-FUC.2: 5 residues within 4Å: Chain A: Q.81, N.103, S.106, V.107, N.194 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.106

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 4 residues within 4Å: Chain A: H.417, S.420, S.545, N.546 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.420

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: N.53, T.55, Q.340 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.53, A:Q.340 NAG.5: 1 residues within 4Å: Chain A: N.322 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.322 NAG.6: 3 residues within 4Å: Chain A: N.432, I.436, W.594 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.436

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, F. et al., Human anti-ACE2 monoclonal antibodies as pan-sarbecovirus prophylactic agents. Biorxiv (2022)

Release Date

2022-09-28

Peptides

Angiotensin-converting enzyme 2: A
05B04 Heavy Chain: B
05B04 Light Chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

C
L

Angiotensin-converting enzyme 2

05B04 Heavy Chain

05B04 Light Chain